Current Seminars : Past Seminars : Future Seminars

C2B2/MAGNet Seminars

May 2008 Events: May 12. 2008 3pm-4pm; Title: Mesoscale Modeling of Macromolecular Machines by Normal Modes; Speaker: Michael Levitt; Affiliation: Stanford University; Location: ICRC Bldg 8th Floor common room 1130 St. Nicholas Ave NY, NY 10032; Host: Barry Honig; Email: bh6@columbia.edu; Movie: MichaelLevitt_May_12_2008.mpg
Apr 2008 Events: Apr 23. 2008 3pm-4pm; Title: Alternative Splicing in Tumors: Detection and Interpretation.; Speaker: Terry Speed; Affiliation: University of California, Berkeley; Location: ICRC Bldg 1130 St. Nicholas Ave C2B2 common room 816; Movie: TerrySpeed_Apr_23_2008.mpg; Slides: TerrySpeedSlides_Apr_23_2008.pdf; Abstract: Prof._Terry_Speed_-_Lecture_Abstract.doc; Apr 15. 2008 3:00-4:00; Title: Predicting functional transcription factor binding through alignment-free affinity-based analysis of orthologous promoter sequences.(Journal Club Seminar); Speaker: Luke Ward (Bussemaker Lab); Affiliation: Columbia University; Location: 816 (Common Room) HICCC; Host: Richard Friedman
Mar 2008 Events: Mar 26. 2008 3pm-4pm; Title: "Evolution of Eukaryotic Transcription Circuits"; Speaker: Hao Li; Location: ICRC Bldg 1130 St. Nicholas Ave C2B2 common room 816; Host: Harmen Bussemaker; Email: haoli@genome.ucsf.edu; Mar 25. 2008 3pm-4pm; Title: Information Bottleneck - Data clustering while preserving Information (Journal Club Seminar); Speaker: Anil Raj; Affiliation: Columbia University; Location: 816 (Common room) HICCC; Host: Dennis Vitkup; Abstract: Anil_Raj_Abstract.txt; Mar 05. 2008 3pm-4pm; Title: "Motifs, Modules, and Machine Learning: Recent Progress and Future Challenges"; Speaker: Chris Wiggins; Affiliation: Dept. Applied Physics & Applied Mathematics/ Columbia University; Location: ICRC Bldg 1130 St. Nicholas Ave C2B2 8 Floor Common room 816; Host: Aris Floratos; Email: chris.wiggins@columbia.edu
Feb 2008 Events: Feb 27. 2008 3pm-4pm; Title: Regulatory Genomics of Drosophila and Mammalian Genomes.; Speaker: Manolis Kellis; Affiliation: MIT/Computer Science/Broad Institute; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Room 816; Host: Barry Honig; Email: manoli@mit.edu; Movie: ManolisKellis_Feb_27_2008.mpg; Abstract: Dr._Kellis_talk_-_Abstract.doc; Feb 06. 2008 3pm-4pm; Title: Toward Millisecond-Scale Molecular Dynamics Simulations of Proteins.; Speaker: David E. Shaw; Affiliation: Columbia University; Location: ICRC Bldg 1130 St. Nicholas Ave NY, NY 8th Floor C2B2 common room 816; Host: Barry Honig; Email: bh6@columbia.edu; Abstract: Abstract_for_Dr._Shaw_seminardoc; Feb 05. 2008 3-4 pm; Title: Intrinsic protein disorder: molecular function and prediction from sequence; Speaker: Avner Schlesinger; Location: ICRC Bldg 1130 St. Nicholas Ave NY, NY 8 Floor C2B2 common room 816; Host: Student Seminar/Journal Club
Jan 2008 Events: Jan 30. 2008 3pm-4pm; Title: Activity Patterns in Biological Networks: Statistical Analysis and Network Reconstruction; Speaker: Daphne Koller; Affiliation: Stanford University; Location: ICRC Bldg 1130 St. Nicholas Ave NY, NY 8 Floor C2B2 common room 816; Email: Koller@CS.Stanford.EDU; Abstract: Lecture_Abstract.doc
Nov 2007 Events: Nov 14. 2007 3pm-4pm; Title: “Computational Dissection of Mammalian Genome Regulation SubNetworks”; Speaker: Micheal Zhang; Affiliation: Lab Cold Spring Harbor; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common Room 816; Host: Andrea Califano; Email: mzhang@cshl.edu; Abstract: Michael_Q._Zhang_Abstact.doc
Oct 2007 Events: Oct 10. 2007 4pm-5pm; Title: SMASH: Single Molecule Approach to Sequencing by Hybridization; Speaker: Bud Mishra; Affiliation: New York University; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor common room 816; Host: Andrea Califano; Email: califano@c2b2.columbia.edu; Movie: 2007-10-10 Mishra Seminar.mpg; Abstract: Dr._Mishra_presentation_abstract.doc
Jun 2007 Events: Jun 27. 2007 3pm-4pm; Title: Sarcomagenesis and Molecular Events Associated with Sarcoma Progression; Speaker: Carlos Cordon-Cardo; Affiliation: Columbia University/ Dept. of Pathology; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Andrea Califano; Email: cordon-c@columbia.edu; Abstract: Dr._Carlos_Cordon-Cardo_AbstractC2B2-07.doc
May 2007 Events: May 30. 2007 3pm-4pm; Title: “The Deterministic Mutation Hypothesis Revisited: Co-evolution of Robustness, Epistasis, and Recombination Favors Asexual Reproduction; Speaker: Aviv Bergman; Affiliation: Albert Einstein College of Medicine/Dept of Pathology; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Andrea Califano; Email: aviv@bergman.org; Movie: Bergman_May_30_07.mpg; Abstract: Abstrac-_Dr._Aviv_Bergman_talk.doc; May 23. 2007 4pm-5pm; Title: Human Diseasome: From Networks to Human Diseases.; Speaker: Albert-Laszlo Barabasi; Affiliation: University of Notre Dame / Dept of Physics; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Andrea Califano; Email: alb@nd.edu; Movie: Barabasi_May_23_07.mpg; May 16. 2007 3pm-4pm; Title: Biological Context Networks: Towards a more Sensitive Predictive Biology of Disease using Network Signatures; Speaker: Simon Kasif; Affiliation: Boston University/Dept. of Biomedical Engineering; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Andrea Califano; Email: kasif@encg.bu.edu; Movie: Kasif_May_16_07.mpg; May 02. 2007 4pm-5pm; Title: Pre-Seady-State Decoding of the Bicoid Morphogen gradient; Speaker: Sven Bergmann; Affiliation: Dept. of Medical Genetics/Univ de Lausanne Switzerland; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Itshack (Itzik) Pe'er; Email: itsik@cs.columbia.edu; Abstract: Abstract_-_Dr._Sven_Bergmann_talk.doc
Apr 2007 Events: Apr 18. 2007 3pm-4pm; Title: Analysis Methods for Association Studies in General and Special Populations; Speaker: Itshack (Itzik) Pe'er; Affiliation: Dept. of Computer Science, Columbia University; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor common Rm 816; Host: Aris Floratos; Email: ip2169@columbia.edu; Movie: ItsikPeer_Apr_18_07.mpg; Apr 11. 2007 3pm-4pm; Title: Deriving the Single-Neuron Transcriptome of C. Elegans to Infer Mechanisms for Synaptic Connectivity.; Speaker: David M. Miller; Affiliation: Vanderbilt University/ Dept. of Cell and Developmental Biology; Location: 1130 St. Nicholas Ave 8th Floor Room 817; Host: Dimitris Anastassiou; Email: david.m.miller@vanderbilt.edu; Movie: Miller_Apr_11_07.mpg; Abstract: Dr._Miller_talk_-abstract.doc
Mar 2007 Events: Mar 21. 2007 3pm-4pm; Title: Deciphering the DNA Recognition Code of Natural and Synthetic Transcription Factors; Speaker: Aseem Ansari; Affiliation: University of Wisconsin-Madison/Dept. of Biochemistry & Genome Center; Location: 1130 St. Nicholas Ave 8th Floor Common room 817; Host: Barry Honig; Email: ansari@mail.biochem.wisc.edu; Movie: Ansari_Mar_21_07.mpg; Abstract: Abstract_for_Dr._Ansari_talk.doc
Feb 2007 Events: Feb 28. 2007 3pm-4pm; Title: The Novel Biophysics of Cell Adhesion; Speaker: Lawrence Shapiro; Affiliation: HHMI, Columbia University / Dept. of Biochem and Molecular Biophysics; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Aris Floratos; Email: shapiro@convex.hhmi.columbia.edu; Movie: Shapiro_Feb_28_07.mpg; Feb 21. 2007 3pm-4pm; Title: The Evolution of Influenza Virus during the 20th and 21st Centuries; Speaker: Arnold Levine; Affiliation: Institute for Advanced Study/School of Natural Sciences; Location: ICRC 1130 St. Nicholas Ave 8th Floor common room 817; Host: Andrea Califano; Email: alevine@ias.edu; Movie: Levine_Feb_21_07.mpg; Slides: Levine_talk_-_Feb_07.ppt; Abstract: Abstract_for_Dr._Levine_talk.doc
Dec 2006 Events: Dec 13. 2006 3pm-4pm; Title: Genetic Variation and Regulatory Networks: Mechanisms and Complexity; Speaker: Dana Pe'er; Affiliation: Columbia University; Location: ICRC Bldg 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Aris Floratos; Email: dp2315@columbia.edu; Movie: Peer-Dec-06.mpg; Abstract: Dr._Peer_abstract.doc
Nov 2006 Events: Nov 29. 2006 3pm-4pm; Title: Nuclear Pore Complexes: The Hole Picture?; Speaker: Michael Rout; Affiliation: The Rockefeller University; Location: 1130 St. Nicholas Ave 8th Floor Common Room 816; Host: Andrea Califano; Email: rout@mail.rockfeller.edu; Movie: Rout-Nov-06.mpg; Nov 15. 2006 3pm-4pm; Title: Similarity measures and Similarity Searches in Genome-wide Numeric Data Sets or Blast the Vectors.; Speaker: Arcady Mushegian; Affiliation: Director of Bioinformatics Center/ Stowers Institute for Medical Research; Location: 1130 St. Nicholas Ave 8th Floor Common Room 816; Host: Andrey Rzhetsky; Email: ARM@stowers-institure.org; Slides: Mushegian-Slides-Nov-06.ppt
Oct 2006 Events: Oct 25. 2006 3pm-4pm; Title: Systems Biology, Cancer Stem Cells, and Inferring Genetic Regulatory Networks.; Speaker: Stuart Kauffman; Affiliation: Institute for Biocomplexity and Informatics - University of Calgary, Canada; Location: 1130 St. Nicholas Ave 8th Floor Common Room 816; Host: Andrea Califano; Email: skauffman@ucalgary.ca; Movie: Kauffman-Oct-06.mpg; Oct 18. 2006 3pm-4pm; Title: Embedding Computation in Studies of Protein Structure and Function.; Speaker: Chris Bailey-Kellogg; Affiliation: Computer Science Dartmouth University; Location: 1130 St. Nicholas Ave 8th Floor Common room 816; Host: Andrea Califano; Email: cbk@cs.dartmouth.edu; Movie: Bailey-Oct-06.mpg; Abstract: Abstract.doc
Sep 2006 Events: Sep 20. 2006 4:30pm-5:30pm; Title: Understanding and Exploiting the Evolution of Eukaryotic Regulatory Sequences.; Speaker: Michael Eisen; Affiliation: University of California, Berkeley; Location: ICRC Bldg 1130 St. Nicholas Ave. 8th Floor Common Room 816; Host: Harmen Bussemaker; Email: mbeisen@lbl.gov; Movie: Eisen talk - 9-20-06.mpg; Slides: Eisen_slides_-_Sept_20_06.ppt
Jun 2006 Events: Jun 14. 2006 4:30pm-5:30pm; Title: Inference of sets of synergistically interacting genes from microarray data; Speaker: Dimitris Anastassiou; Affiliation: Columbia University; Location: ICRC Bldg/ Aud III 8th Floor Common Room 816; Slides: AnastassiouSlides_6_14_06.ppt; Abstract: Dr._Anastassiou_Seminar_Abstract.pdf; Jun 07. 2006 3pm-4pm; Title: Cancer knowledge exploration and modeling with OncoTCap; Speaker: Roger Day; Affiliation: University of Pittsburgh; Location: ICRC Bldg/ Aud III 8th Floor Common Room 816; Host: Aris Floratos; Abstract: Roger_Day_Abstract_6-7-06.pdf
May 2006 Events: May 24. 2006 4:30pm-5:30pm; Title: MINDY: An Algorithm for the Genome-wide Discovery of Modulators of Transcriptional Interactions; Speaker: Kai Wang; Affiliation: Columbia University; Location: ICRC Bldg/ Aud III 8th Floor Common Room 816; Movie: Wang_5_24_06.mpg; Slides: MAGNET_May24_Kai_Wang_posted.ppt; May 17. 2006 4:30pm-5:30pm; Title: Computational and Experimental Approaches to the Study of Protein-DAN Interactions and Gene Regulation.; Speaker: Gary Stormo; Affiliation: Professor, Division of Biology & Biomedical Sciences/ Washinton Univ. in St. Louis; Host: Harmen Bussemaker; Email: stormo@ural.wustl.edu; Slides: StormoSlides-5-17-06.ppt; May 03. 2006 4:30pm-5:30pm; Title: Structure, Function, and Evolution of Cellular Networks.; Speaker: Dennis Vitkup; Affiliation: Joint Ctrs.for Systems Biology, Columbia University; Location: ICRC Bldg/ Aud III 8th Floor Common Room 816; Email: dv2121@columbia.edu; Movie: Vitkup_05_03_2006.mpg
Apr 2006 Events: Apr 26. 2006 4:30pm-5:30pm; Title: Coping with Cenetic and Non-Genetic Variations.; Speaker: Yitzhak Pilpel; Affiliation: Dept. of Molecular Genetics/ Weizmann Institute of Science/ Rehovot Israel; Location: ICRC Bldg/Aud III 8th Floor Common Room 816; Host: Barry Honig; Email: pilpel@weizmann.ac.il; Movie: Pilpel_4_26_06.mpg; Apr 19. 2006 4:30pm-5:30pm; Title: Revising our View of the Mammalian Transcriptome.; Speaker: Brendan Frey; Affiliation: Associate Professor/ Electrical & Compurter Engineering/Univ. of Toronto; Location: ICRC Bldg/ Aud III 8th Floor Common Room 816; Host: Christina Leslie; Email: frey@psi.toronto.edu; Movie: Brendan Frey talk - 4-19-06.mpg
Mar 2006 Events: Mar 29. 2006 3pm-4pm; Title: Predictive Modeling of Condition-Specific Regulation Of mRNA Stability; Speaker: Harmen Bussemaker; Affiliation: Joint Ctrs.for Systems Biology, Columbia University; Location: ICRC Bldg/Aud III 8th Floor Common room; Host: Aris Floratos; Email: hjb2004@columbia.edu; Movie: Harmen - 3-29-06.mpg; Slides: C2B2_Seminar_March_2006_-_combined.pdf; Abstract: Dr._Bussemaker_Seminar_Abstract.doc; Mar 22. 2006 3pm-4pm; Title: Of yeast, birds, mice, and men: Bayesian machine learning and systems biology.; Speaker: Alexander Hartemink; Affiliation: Duke University; Location: Irving Cancer Research Center Bldg, 8th Floor Conference Room; Host: Andrea Califano; Mar 17. 2006 3pm-4pm; Title: Rule-based Modeling of Signaling by Epidermal Growth Factor Receptor.; Speaker: Michael L. Blinov; Affiliation: Los Alamos National Laboratory, Los Alamos, NM; Location: 1130 St. Nicholas Ave. ICRC Bldg 8th Floor Common Room; Host: Chris Wiggins; Email: mblinov@lanl.gov; Abstract: Blinov_Abstract.doc
Feb 2006 Events: Feb 22. 2006 3pm-4pm; Title: Interactome Neworks; Speaker: Marc Vidal; Affiliation: Harvard Medical School; Location: Irving Cancer Research Center Bldg, 8th Floor Conference Room; Host: Andrea Califano
Jan 2006 Events: Jan 11. 2006 3pm-4pm; Title: Transmembrane Protein Structures Without X-rays; Speaker: Nir Ben-Tal; Affiliation: Tel Aviv University; Location: Irving Cancer Research Center Bldg, 8th Floor Conference Room; Host: Barry Honig; Slides: Nir_Ben-Tal_slides_2006.pdf; Jan 04. 2006 3pm-4pm; Title: geWorkbench - A bioinformatics platform for integrated genomics; Speaker: Aris Floratos; Affiliation: Columbia University; Location: Irving Cancer Research Center Bldg, 8th Floor Conference Room

C2B2/MAGNet Seminars All Seminars C2B2 Seminars External Seminars

C2B2/MAGNet Seminars